Microbiome analysis using 2nd and 3rd generation DNA sequencing + multivariate data analysis

This site serves as dry-lab material for the 2 week PhD course Microbiome Analysis Course using 2nd and 3rd Generation DNA Sequencing. Here you will find content on statistical data analysis of amplicon-seq microbiome data including preprocessing, descriptives, univariate- and multivariate statistical modelling ending with comparison of additional layers of omics data.

The course slides can be found here

We heavily draw on the great work of the authors of phyloseq and metagenomeseq.